Try playing the chords this way:
E    022100
F#m  244200
E/G# 066400
A    577600
B    799800
C#m  9ee900  e=11th fret

Intro
E---------------------------------------------------------
B---------------------------------------------------------
G----------9------9----9--------8h9--9h11--11h13--11--9---
D---------9------9----9---9h11-------9-----9------9---9---
A---9p7--7---9s11----0------------------------------------
E---------------------------------------------------------

E--------------------------------------------
B ---------------------------------------12---
G-----9------9------9-------------9--8-------
D----9------9-----9---9-----9h11-------------
A ---7---9s11----0-------0--------------------
E--------------------------------------------

(Verse 1)

 E     E/G#      A      C#m    B
Just a singin' a gospel song today
 E            A2
Get ready to send the years
   C#m              B
Of guilt and shame away
 E              A2
The years of failing
               B
The years of nailing up yourself
                      E    A2
To a cross you can't bear
       C#m          B    A
That's why He was there


(Pre-Chorus)

 A2               B
What a beautiful day
 A2       B
When He washed all our sins away
 A2               B
What a beautiful day


(Chorus)

     E             E/G#  A    B
By grace you have been saved
     E             E/G#  A    B
By grace you have been saved
     E             E/G#  A
By grace you have been saved
   E/G#          F#m            B
By grace through faith, through faith


*Before 2nd Verse
E-----------------------------------------------------------
B-----------------------------------------------------------
G-----9------9----9--------8h9--9h11-------------------8h9--
D----9------9----9---9h11-------9----------------9h11-------
A---7---9s11----0--------------------------9h11-------------
E-----------------------------------------------------------


(Verse 2)

 E         A2             B
Even the faith I have to sing
  E     A2         C#m   B     E     A2
Halle, halle, hallelujah to my King
       B
It's freely given
 E           A2            C#m        B    A
That I might not boast in myself but Him


(Bridge)
 G              A
Can't sing it enough, say it enough
                     G
Play it enough, when will I get it
         A                         G
I can't earn it, and no I don't deserve
               B
Can't say it enough